Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs7135092 | chr12:69658330 | T/C | 0.000129 | 406 | 15.17 | 14.63 | 18.27 | KM Plot |
| LGG | rs71410220 | chr14:20748388 | G/A | 2.3E-5 | 387 | 15.73 | 15.7 | 8.07 | KM Plot |
| LGG | rs71476553 | chr15:31950758 | C/T | 0.000138 | 404 | 15.7 | 15.32 | 11.8 | KM Plot |
| LGG | rs71476558 | chr15:31966669 | C/T | 0.000122 | 404 | 15.93 | 14.87 | 11.8 | KM Plot |
| LGG | rs7148538 | chr14:74392342 | G/C | 2.0E-7 | 405 | 14.77 | 17.03 | 3.93 | KM Plot |
| LGG | rs71491325 | chr10:934281 | A/C | 6.11E-6 | 396 | 14.9 | 17.77 | 10.57 | KM Plot |
| LGG | rs71730624 | chr6:57048063 | CTT/C | 3.74E-6 | 400 | 15.33 | 15.43 | 7.8 | KM Plot |
| LGG | rs71751705 | chr6:27901391 | CTAGAACCT/C | 3.69E-5 | 406 | 15.2 | 15.6 | 14.8 | KM Plot |
| LGG | rs7177083 | chr15:31891924 | T/C | 0.00014 | 404 | 15.27 | 15.45 | 13.58 | KM Plot |
| LGG | rs71795171 | chr6:57043563 | TAAAAA/T | 3.29E-6 | 404 | 15.33 | 15.43 | 7.8 | KM Plot |
| LGG | rs7184117 | chr16:72049212 | G/T | 3.8E-7 | 406 | 15.25 | 16.97 | 4.28 | KM Plot |
| LGG | rs71847668 | chr2:102116830 | CATGAA/C | 1.14E-11 | 402 | 16.47 | 10.63 | 3.95 | KM Plot |
| LGG | rs719008 | chr12:48416052 | G/T | 0.000222 | 402 | 14.57 | 16.37 | 15.63 | KM Plot |
| LGG | rs7191318 | chr16:67429595 | C/A | 6.24E-5 | 406 | 15.25 | 16.42 | 16.55 | KM Plot |
| LGG | rs7192202 | chr16:68546255 | G/A | 1.14E-8 | 406 | 15.13 | 18.23 | 6.63 | KM Plot |